[RESOLVED] Session structure + create_conc usage?

Use Questions
1

Hi!

I’m trying to generate .conc files for preprocess_conc. My subjects that I want to analyze have been analyzed in separate batches over time, and some of them have the directory structure of:

hcp
images

while others have the directory structure of:

dicom
hcp
inbox
nii

All of these subjects have gone through preprocessing and run_QC without issue, but I’m unsure why there’s a difference in directory structure. I know that create_conc pulls files from the images directory, which is why for some subjects with the dicom,hcp,inbox,nii structure it’s erroring out.

Best,

Noah

2

Hi Noah,

Once HCP Pipelines are through you need to run map_hcp_data (https://qunex.readthedocs.io/en/latest/api/gmri/map_hcp_data.html) to map HCP data back from HCP folder structure to the QuNex folder structure (this is when images/functional gets created).

Best, Jure