[RESOLVED] Session structure + create_conc usage?

Hi!

I’m trying to generate .conc files for preprocess_conc. My subjects that I want to analyze have been analyzed in separate batches over time, and some of them have the directory structure of:

hcp
images

while others have the directory structure of:

dicom
hcp
inbox
nii

All of these subjects have gone through preprocessing and run_QC without issue, but I’m unsure why there’s a difference in directory structure. I know that create_conc pulls files from the images directory, which is why for some subjects with the dicom,hcp,inbox,nii structure it’s erroring out.

Best,

Noah

Hi Noah,

Once HCP Pipelines are through you need to run map_hcp_data (https://qunex.readthedocs.io/en/latest/api/gmri/map_hcp_data.html) to map HCP data back from HCP folder structure to the QuNex folder structure (this is when images/functional gets created).

Best, Jure