[RESOLVED] Processing data not in the home directory

1

Dear Jure:

Can you kindly let me know how to properly setup the qunex_container command for processing data not in ${HOME} directory please? I have tried before but failed many times, so please forgive me for asking this trivial question.

Many thanks.

Best,
Ed

2

Hi,

When you use qunex_container, you only need to make sure that a data directory is available inside and outside of the container under the exact same path. You can achieve this by adding --bind flags for apptainer and -v through dockeropt for docker.

Note that if you move an existing study folder, you need to update paths in batch files and session files.

Lining

3

Hi Lining:

Great! It finally works!

Thanks so much,
Ed