[RESOLVED] How to set up a connectivity analysis?

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2

Hi Chiara,

We are in the process of fixing the documentation for parcellate_bold.

  • parcellationfile: It should be one of the dlabel files shipped with the qunex container. For example, you can use the Cole Anticevic parcellation using this path (in the container)
/opt/qunex/qx_library/data/parcellations/cole_anticevic_net_partition/CortexSubcortex_ColeAnticevic_NetPartition_wSubcorGSR_parcels_LR_ReorderedByNetworks.dlabel.nii
  • outpath: Normally the output path is usually <session_id>/images/functional/ which is a folder in each session folder, which means the outpath parameter should be /images/functional/.
  • outname is a suffix that will be added to the output file name, you can use this parameter to identify the name of the parcellation used to generate the parcellated data.

In addition, the inputfiles parameter should be inputfile. You can find documentation for the command here parcellate_bold — QuNex documentation

Lining