Hello, we’re trying to just use Qunex to run hcp_icafix on HCP that has already been minimally preprocessed. We ran create_study to create the necessary Qunex folders, and then copied our preprocessed data into the /StudyFolder/sessions/SubID/hcp/SubID folder.
When we try to run hcp_icafix with the following command:
/cm/shared/qunex_container hcp_icafix --sessionsfolder=“/data/ckorponay/qunex/HCP/sessions/100408” --container=“/data/singularity-images/qunex_suite-0.95.3a.sif” --bind=“/data:/data” --hcp_icafix_bolds=“tfMRI_WM_LR”
It doesn’t seem like anything happens. I’m assuming that’s because we’re missing the parameter, batch, and/or mapping files. How would we create those for this purpose?