Hi, all
I got the following error when I tried to run qunex today:
qunex_container parcellate_bold \
--sessionsfolder="${WORK_DIR}/${STUDY_NAME}/sessions" \
--sessions="${SUBJ}" \
--batchfile="${WORK_DIR}/${STUDY_NAME}/processing/batch.txt" \
--inputfile="bold2_Atlas_s_hpss_res-mVWMWB1d_lpss.dtseries.nii" \
--inputpath="images/functional" \
--inputdatatype="dtseries" \
--parcellationfile="/mnt/hdd1/yumingz/washingtonu/script/script/CortexSubcortex_ColeAnticevic_NetPartition_wSubcorGSR_parcels_LR_ReorderedByNetworks.dlabel.nii" \
--overwrite="no" \
--extractdata="yes" \
--outname="parcellate_bold" \
--outpath="hcp" \
--bind="${WORK_DIR}:${WORK_DIR}" \
--container="${QUNEX_CONTAINER}";
where, QUNEX_CONTAINER=“gitlab.qunex.yale.edu:5002/qunex/qunexcontainer:1.1.1”. But the error showed:
(base) yumingz@localadmin:/mnt/hdd1/yumingz/washingtonu/script/script$ ./TRY1.sh --step 30
---> QuNex will run the command over 428 sessions. It will utilize:
Maximum sessions run in parallel for a job: 1.
Maximum elements run in parallel for a session: 1.
Up to 1 processes will be utilized for a job.
Job #1 will run sessions: fcs-74c,fcs-70c,FCS_100_C2,FCS_097_C2,FCS-69A,FCS_103_DBSI,fcs_181_c,FCS_164_A,FCS_133_A,pr-66a,fcs-109a,FCS_168_A,pr-31a,fcs107a,FCS_111_C,fcs_014_amc_2,FCS_184_A,FCS82A,FCS_152_C,fcs-62c2,fcs-12amc,FCS_136_A,fcs_163_c,FCS_103_DBSI_MR1,FCS-106-C2,FCS_168_C2,FCS_173_A,fcs_132_c,fcs-117a,fcs-06amc2,pr-55a,fcs_148_a,FCS_194_A,fcs_138_c,fcs-107c,FCS103C2,fcs_146_a,fcs_017_amc2,fcs_190_A,fcs-48C2,FCS116A,fcs-79c,pr53a,pr-60a,FCS_062_D,FCS_029_AMC1,fcs_140_c2,fcs-101c,FCS_180_A,pr-33c2,fcs_005_amc_2,fcs-86c2,FCS_193_C,fcs_157_a,fcs_173_c,FCS_188_A,pr-58a,FCS_190_C,fcs_129_a,FCS_137_A,FCS_139_A,FCS_181_C2,FCS_178_C2,FCS_164_C,FCS116C,FCS_182_C2_2,FCS_049_C,FCS_135_A,fcs_171_c,fcs-80c,FCS_196_A,fcs-78c,fcs-88A,fcs-115A,fcs-52c2,FCS_119_C2,FCS_035_AMC2,fcs_143_c,FCS67C,fcs-115c,pr27a,pr-30c2,fcs_182_a,pr-68a,PR-56c,fcs-84c2,FCS_028_AMC,pr-49a,FCS_022_AMC,fcs-112A,fcs_165_a,FCS_022_AMC2,fcs_013_amc,FCS_180_C,FCS76A_200910261426,pr24a,fcs-57c2,pr-71a,pr-30,FCS_192_A,fcs_135_c,fcs-109c,FCS_186_C2,pr-44a,FCS_184_C,pr-35c2,pr-24c2,FCS_152_A,fcs_021_amc2,fcs_102a,FCS80A,pr-54s,fcs_151_c2,fcs_102_c2,FCS_172_A,FCS_191_A,pr38a,fcs-78c2,FCS_170_C,pr-43c,pr-26c,fcs_175_C,pr-54c,FCS_030_AMC1,FCS_193_A,fcs-84a,pr-41a,pr-27c2,fcs_109_c2,FCS_024_AMC2,FCS_195_A,FCS_125_A,fcs-111A,fcs_149_c,fcs_167_c,fcs_134_a,FCS_142_A,fcs-65c,pr-26a,FCS69C,fcs_amc_32,FCS_165_C2,FCS_131_A,FCS82C,pr-52a,pr-35a,fcs_122_c,FCS_032_AMC2,FCS_064_C2,fcs_122_a,fcs-58C2,FCS-70A,fcs-88c2,pr-45c,FCS_143_C2,PR40A,pr-32c,FCS_027_AMC1,FCS76A,fcs_142_c,fcs-10amc2,FCS_187_C2,PR-51c,pr-43a,fcs-73c2,fcs-75c,fcs-83c2,fcs_187_a,PR-62C,pr-46a,FCS82C2,FCS_174_A,fcs-102c,FCS77A,fcs_162_c,pr-63,FCS_171_C2,FCS-02AMC,fcs-73a,FCS_048_DBSI,fcs_138_c2,pr-74a,FCS_161_A,pr-58c,FCS69C_200912181128,fcs-108c,fcs-83c,FCS-105-C2,FCS40,pr47a,FCS_17_AMC,pr-57a,FCS_196_C,fcs_amc_032,FCS_030_AMC2,fcs_129_c2,fcs-79c2,fcs_133_c2,fcs_132_c2,fcs_034_amc,fcs-07amc2,fcs-07acm,pr-48a,pr-61a,fcs_024_amc,FCS_190_C2,pr-62a,fcs-73c,FCS_168_C,FCS_170_A,fcs_140_c,10_07_21-12_41_fcs-108a,FCS120C,FCS-51C,pr-51a,FCS_166_A,fcs-01acm,fcs_147_c,pr-36a,fs_124_c2,FCS_173_C2,fcs_177_a,fcs_120_c2,fcs_112_c2,fcs-71c,fcs_003_amc_2,fcs-70c2,fcs_122_c2,FCS145_C2,fcs_129_c,pr-28a,FCS_169_C2,FCS-140A,pr-45a,FCS_035_AMC1,fcs-amc11,FCS_161_C,fcs_147_a,fcs-amc14,fcs_036_amc2,FCS_116_C2,FCS-78a,fcs_166_c2,fcs_175_a,pr-75a,fcs_126_a,fcs-100a,fcs-84A,pr-57c,fcs-77c,FCS_161_C2,fcs_88c,PR-37A,pr-60c,fcs-09amc2,fcs_002_amc2,FCS_141_C2,fcs_012_amc2,FCS81C2,fcs-61c2,PR-43C,fcs_123_a,FCS103A,fcs_164_c2,FCS-112C,fcs08amc,FCS_145_A,FCS_156_A,fcs_134_c,fcs_163_a,fcs-101A,pr-34a,pr-31c,FCS_141_A,pr-35c,fcs_151_c,PR40C,FCS_142_C2,FCS_131_C2,pr-50a,FCS106C,FCS_187_C,FCS81C,fcs_162_c2,fcs-54c2,fcs-85a,fcs_148_c2,fcs_177_c,fcs-50c2,FCS_162_A,fcs_033_amc_2,fcs-65c2,fcs-114a,FCS87C,fcs-110A,fcs_023_amc,FCS_144_A,fcs_165_c,fcs_124_c,fcs_125_c,fcs_031_AMC2,FCS_160_A,fcs_128_a,fcs_019_amc2,FCS67C2,fcs83a,fcs_155_a,FCS_192_C2,pr-56a,fcs_158_c,FCS120A,FCS_169_C,pr-46c,fcs-119c,FCS_151_A,pr-24c,fcs-56c2,FCS44C,fcs_018_amc1,fcs-118a,fcs_034_amc2,fcs_027_amc2,FCS_186_A,FCS_025_AMC2,pr-64a,FCS_065_C2,FCS_178_A,pr-33a,FCS_135_C2,pr-39a,FCS87A_200912100900,FCS_170_C2,FCS_155_C2,fcs_139_c,fcs_133_c,pr-33c,fcs-65a,FCS_160_C,pr26c2,FCS_196_C2,FCS_146_C2,FCS_181_A,pr-30c,FCS587C2,FCS_131_C,FCS_124_A,pr-27c,FCS67A,FCS82A_200911201417,FCS-09AMC,FCS87A,pr-48c,FCS79A,fcs_143_a,fcs_011_amc_2,fcs-72c,fcs-71c2,pr-31c2_c,fcs_150_A,FCS106A,pr-32a,fcs_031_amc,FCS-119A,fcs_026_amc1,fcs-amc04c,fcs-49c2,fcs_117_c,pr-29a,fcs-68c,FCS_160_C2,FCS103C,FCS_138_A,FCS69C2,FCS_016_AMC1,fcs_154_a,FCS_169_A,PR-63C,FCS_021_AMC,fcs_167_a,fcs-100c,FCS_193_C2,fcs_178_c,FCS_166_C,fcs-47c2,fcs_155_c,FCS40C2,fcs_146_c,FCS_115_C2,FCS_141_C,fcs_111_c2,fcs-104c,FCS_186_C,fcs-60c2,fcs-72a_2,FCS_026_AMC2,FCS_128_C,FCS_048_DBSI_MR1,fcs_132_a,FCS_171_A,pr-50c,FCS67C_200911301150,FCS_145_C,FCS_149_A,pr-61c,FCS_177_C2,FCS_175_C2,FCS_179_A,FCS105C,fcs_028_amc2,fcs_193_a,FCS_019_AMC1,fcs_101_c2,fcs_148_c,fcs-86a,pr-47c,FCS_182_C,FCS_192_C,fcs_183_a,fcs_036_amc,fcs_029_amc2,FCS_108_C2,pr-52,pr-34c,fcs_158_a,fcs-104a,FCS_104_C2,fcs-63c2,FCS_025_AMC
Unable to find image 'gitlab.qunex.yale.edu:5002/qunex/qunexcontainer:1.1.1' locally
docker: Error response from daemon: Get "https://gitlab.qunex.yale.edu:5002/v2/": EOF
Run 'docker run --help' for more information
I thought I had accidentally cleared the container, so I tried logging back into qunex for the download, but the same error was reported:
(base) yumingz@localadmin:/mnt/hdd1/yumingz/washingtonu/script/script$ docker login gitlab.qunex.yale.edu:5002 -u yzhong
Password:
Error response from daemon: Get "https://gitlab.qunex.yale.edu:5002/v2/": EOF
This reported error seems to be the same as yesterday’s post
https://forum.qunex.yale.edu/t/fetching-older-qunex-versions/1309/2
What might be the cause of this? Looking forward to your reply.
Best
Acacius