Description:
When using Qunex v0.90.6 as a Singularity container and running create_study via qunex_container, the command fails complaining that create_study is incompatible with gmri.
Call:
qunex_container create_study --studyfolder=/scratch.global/roedi004/data
Logs:
(base) roedi004@ln0004 [/scratch.global/roedi004] % qunex_container create_study --studyfolder=/scratch.global/roedi004/data
/home/wozniakj/roedi004/qunex/qunex_container:311: SyntaxWarning: "is" with a literal. Did you mean "=="?
elif k is 'jobName' and jobname == 'schedule':
(base) roedi004@ln0004 [/scratch.global/roedi004] % --> unsetting all environment variables: PATH MATLABPATH PYTHONPATH QUNEXVer TOOLS QUNEXREPO QUNEXPATH QUNEXLIBRARY QUNEXLIBRARYETC TemplateFolder FSL_FIXDIR FREESURFERDIR FREESURFER_HOME FREESURFER_SCHEDULER FreeSurferSchedulerDIR WORKBENCHDIR DCMNIIDIR DICMNIIDIR MATLABDIR MATLABBINDIR OCTAVEDIR OCTAVEPKGDIR OCTAVEBINDIR RDIR HCPWBDIR AFNIDIR PYLIBDIR FSLDIR FSLGPUDIR PALMDIR QUNEXMCOMMAND HCPPIPEDIR CARET7DIR GRADUNWARPDIR HCPPIPEDIR_Templates HCPPIPEDIR_Bin HCPPIPEDIR_Config HCPPIPEDIR_PreFS HCPPIPEDIR_FS HCPPIPEDIR_PostFS HCPPIPEDIR_fMRISurf HCPPIPEDIR_fMRIVol HCPPIPEDIR_tfMRI HCPPIPEDIR_dMRI HCPPIPEDIR_dMRITract HCPPIPEDIR_Global HCPPIPEDIR_tfMRIAnalysis MSMBin HCPPIPEDIR_dMRITractFull HCPPIPEDIR_dMRILegacy AutoPtxFolder FSLGPUScripts FSLGPUBinary EDDYCUDADIR USEOCTAVE QUNEXENV CONDADIR MSMBINDIR MSMCONFIGDIR R_LIBS FSL_FIX_CIFTIRW
Generated by QuNex
------------------------------------------------------------------------
Version: 0.90.6
User: roedi004
System: ln0004
OS: RedHat Linux #1 SMP Wed Apr 28 21:49:45 UTC 2021
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\___███\ \______/ ║ \__| \__| \_______\__/ \__|
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DEVELOPED & MAINTAINED BY:
Anticevic Lab, Yale University
Mind & Brain Lab, University of Ljubljana
Murray Lab, Yale University
COPYRIGHT & LICENSE NOTICE:
Use of this software is subject to the terms and conditions defined in
'LICENSE.md' which is a part of the QuNex Suite source code package:
https://bitbucket.org/oriadev/qunex/src/master/LICENSE.md
---> Setting up Octave
---> QuNex environment set successfully!
........................ Running QuNex v0.90.6 ........................
--- Full QuNex call for command: create_study
gmri create_study --studyfolder="/scratch.global/roedi004/data" --sessions="None"
---------------------------------------------------------
ERROR in running create_study at gmri:
Incompatible command
Command create_study can not be run on multiple sessions!
The call received was:
(please note that when run through scheduler, all possible parameters,
even non relevant ones are passed)
qunex create_study \
--studyfolder=/scratch.global/roedi004/data \
--sessions=None
Please run `qunex ?create_study` to get help for the failed command.