QuNex 1.2.2 release

News
1

Hi,

We are in the process of releasing QuNex 1.2.0 all containers should be available within a couple of days. Below is the list of updates:

  • Support for longitudinal processing in hcp_icafix.
  • Support for longitudinal processing in hcp_msmall.
  • Improved documentation at several locations.
  • Fixed the copy_study command so it does not crash when some folders do not exist and added support for copying longitudinal studies.
  • Fixed a bug where some parameters where not parsed correctly when set to NONE.
  • Fixed a bug with folder binds in qunex_container.
  • Fixed a bug where import_hcp did not work in some cases with Diffusion data.
  • Fixed a bug where sessions level parameters were not properly parsed from the batch file if prefixed with --.
  • Fixed a bug where missing or wrongly set hcp_avgrdcmethod and hcp_bold_dcmethod did not result in a descriptive error.
  • More robuts import_bids, previously it did not work on some BIDS compliant folder setups.
  • More robuts import_dicom, if images are already sorted in subfolder, you can use the --existing_structure flag to detect images in a optimized way.
  • More robust steps parsing in run_recipe, it will not work even if your comma separated list of steps has spaces in it.

Let us know if something does not work as it should.

Best, Jure

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2

Some nasty bugs sneaked into QuNex 1.2.0. 1.2.1 should fix them:

  • Fixed a bug when filtering bolds and sessions in combination with the batch file sometimes did not work correctly.
  • Some additional commands now run in parallel over multiple sessions/images by default.
  • Fixed a bug where QuNex did not properly trigger some external commands.

Best, Jure

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3

We are in the process of releasing QuNex 1.2.2:

  • Some commands now add additional tags to the log name to make it easier to comprehend.
  • Exposed additional hcp_icafix parameters that allow processing of legacy datasets.
  • Improved the efficiency of the copy_study command.
  • Improved error reporting and robustness of several commands.
  • The map_hcp_data is now more robust and prints errors that are more user friendly in case of issues.
  • Fixed a bug in run_recipe where sessions were not properly propagated into the recipe commands.
  • Fixed a bug with run_recipe when the SLURM job array was used.
  • Fixed a bug in run_qa where the config file was not parsed properly, added some additional output messages for user friendliness.

Best, Jure