Using HCP temporal ICA pipeline

Dear Jure,
You mentioned that I can run Wishart Filtering as a last step of preprocessing. Do I understand correctly that I should run
hcp_icafix →
hcp_MSMAll →
hcp_make average dataset →
hcp_temporal_ica?

Do I understand correctly that, in order to extract fc, next I ran
map_hcp_data
create_bold_brain_masks
compute_bold_stats
create_stats_report
extract_nuisance_signal
preprocess_conc

Do I need to make any changes/adjustments to map ICA-based outputs and not just regular HPC minimal based outputs?
Thank you.

Yes, the sequence of commands is correct.

hcp_temporal_ica probably won’t run out of the box as it usually requires a significant amount of parmeter adjustments to get it running on your data.

Also, map_hcp_data might require some changes to parameters to pull out tICA as well. We can tackle that once you are at that point.

Best, Jure

Jure - Thank you !
Will do.