[RESOLVED] XNAT Container setting certificate error with v0_50_01 and newer

Issues
1

error_ssl_v0_50_01_done_runTurnkey_HCPA001_2020-05-11_11.46.0029580555.log (1.7 KB) General issue with newer containers (v0_50_01 and v0_50_02)

  • D(escription)
    The new containers (v0_50_01 and v0_50_02) are getting an ssl error in XNAT, which means that it’s not an XNAT or Spinup issue but something wrong with our container. In addition, the status is marked complete on XNAT and log as done. Example provided for v0_50_02.

  • C(all):

/opt/qunex/connector/functions/RunTurnkey.sh --bolds=""  --xnathost=https://xnat.med.yale.edu --xnatuser=e442d108-bb1f-4541-a483-0a1f79ba3110 --xnatpass=CcGI9N4lZhVcW7JUNnPBJiFf2ELfBmqDPnbC7ir48F4CodWof26dSjSu0njtaLad --batchfile=HCPA001_batch_parameters.txt --overwritestep=yes --overwriteprojectxnat=no --mappingfile=HCPA001_mapping.txt --xnataccsessionid=YALE_XNAT18_E00007 --xnatsessionlabels=HCPA001 --xnatprojectid=Upload_Test --xnatsubjectid=YALE_XNAT18_S00658 --subjects="HCPA001" --turnkeysteps="createStudy,mapRawData,processInbox,getHCPReady,setupHCP,createBatch,hcp1" --subjid=""

XNAT Build location: /Volumes/YaleStorage/XNAT/build/beb12962-f272-4167-b026-69f118832191

  • L(ogs):

runTurnkey Log: /Volumes/YaleStorage/XNAT/build/beb12962-f272-4167-b026-69f118832191/Upload_Test/processing/logs/comlogs/done_runTurnkey_HCPA001_2020-05-11_11.46.0029580555.log

Outputs:

curl: (77) error setting certificate verify locations:
CAfile: /etc/ssl/certs/ca-certificates.crt
CApath: none
[31mSome or all of XNAT database variables were not set correctly: [0m
[31m --> XNAT_SUBJECT_ID : YALE_XNAT18_S00658 [0m
[31m --> XNAT_SUBJECT_LABEL : [0m
[31m --> XNAT_ACCSESSION_ID : YALE_XNAT18_E00007 [0m
[31m --> XNAT_SESSION_LABEL : [0m
[32m ===> Successful completion of runTurnkey. Check final Qu|Nex log output: [0m
[32m /output/Upload_Test/processing/logs/comlogs/done_runTurnkey_HCPA001_2020-05-11_11.46.0029580555.log