Hello, when attempting to use import_HCP we get a message that Qunex isn’t able to “parse” any of the files contained in the subject’s folders (see example output below), despite correctly identifying the files and where they are stored. Any idea why this might be the case? Here’s our command:
/cm/shared/qunex_container import_hcp --sessionsfolder=“/data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/HCPYA_practice_100408/sessions” --inbox=“/data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408” --archive=move --overwrite=yes --container=“/data/singularity-images/qunex_suite-0.95.3a.sif” --bind=“/data:/data”
Output:
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ERROR: Could not parse file: /data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408/hcp/100408/MNINonLinear/Native/100408.L.sphere.reg.native.surf.gii
ERROR: Could not parse file: /data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408/hcp/100408/MNINonLinear/Native/100408.thickness.native.dscalar.nii
ERROR: Could not parse file: /data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408/hcp/100408/MNINonLinear/Native/100408.R.midthickness.native.surf.gii
ERROR: Could not parse file: /data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408/hcp/100408/MNINonLinear/Native/100408.L.BA.native.label.gii
ERROR: Could not parse file: /data/qnilab/AD_NPS_R01_2022_Test/HCP_YA/qunex/data/100408/hcp/100408/MNINonLinear/Native/100408.L.ArealDistortion_FS.native.shape.gii
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