Description:
When I run the following command
qunex schedule \
--command='matlab -nodisplay -nosplash -r "try HCP(true); catch ME; end; quit;"' \
--settings="SLURM,jobname=HCP_FC,time=00-3:00:00,ntasks=1,cpus-per-task=1,mem-per-cpu=50G,partition=pi_anticevic"
spaces in the command are replaced with commas as can be seen from the qunex output:
........................ Running Qu|Nex v0.62.5 ........................
---> Resetting to defaults:
--- Full Qu|Nex call for command: schedule
gmri schedule --command=matlab,-nodisplay,-nosplash,-r,"try,HCP(true);,catch,ME;,end;,quit;" --settings=SLURM,jobname=HCP_FC,time=00-3:00:00,ntasks=1,cpus-per-task=1,mem-per-cpu=50G,partition=pi_anticevic
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Quantitative Neuroimaging Environment & Toolbox (Qu|Nex) Suite Version 0.62.5
Submitting:
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#!/bin/sh
#SBATCH --partition=pi_anticevic
#SBATCH --cpus-per-task=1
#SBATCH --time=00-3:00:00
#SBATCH --ntasks=1
#SBATCH --mem-per-cpu=50G
#SBATCH --job-name=HCP_FC
matlab,-nodisplay,-nosplash,-r,"try,HCP(true);,catch,ME;,end;,quit;"
When I use gmri schedule it works as expected.