[RESOLVED] QC templates appear to be missing from Grace directory

Issues
1

I am trying to run T1w QC and it looks like some QC template files on Grace were removed during a git update.

Call:

--subjectsfolder="/gpfs/project/fas/n3/Studies/NAPLS3/subjects" \
--subjects="01-S0405_M04" \
--outpath="/gpfs/project/fas/n3/Studies/NAPLS3/subjects/QC" \
--modality='T1w' \
--overwrite='yes' \
--container="/gpfs/project/fas/n3/software/Singularity/qunex_suite-latest.sif"

Error log:
/gpfs/project/fas/n3/Studies/NAPLS3/processing/logs/comlogs/error_runQC_01-S0405_M04_2020-05-26_13.09.0031825885.log

Relevant section of output (lines 1-2 of log)

---> Specified folder contains no scenes: /opt/qunex/library/data/scenes/qc 
---> Reverting to defaults: /opt/qunex/library/data/scenes/qc

Checking the folder where QC template files should be located:

ls -ltr /gpfs/project/fas/n3/software/qunex/library/data/scenes/qc 

total 9347
-rwxrws---+ 1 aa353  1331453 Mar  4 06:47 TEMPLATE.DWI.QC.wb.scene
-rwxrws---+ 1 aa353  3111102 Mar  4 06:47 TEMPLATE.PCONN.BOLD.QC.wb.scene
-rwxrws---+ 1 aa353  2342596 Mar  4 06:47 TEMPLATE.PSCALAR.BOLD.QC.wb.scene
-rwxrws---+ 1 aa353  2616557 Mar  4 06:47 TEMPLATE.general.QC.wb.scene
-rwxrws---+ 1 jd2528      40 Apr 23 04:21 TEMPLATE.BOLD.QC.wb.scene.REMOVED.git-id
-rwxrws---+ 1 jd2528      40 Apr 23 04:21 TEMPLATE.GBC.BOLD.QC.wb.scene.REMOVED.git-id
-rwxrws---+ 1 jd2528      40 Apr 23 04:21 TEMPLATE.T1w.QC.wb.scene.REMOVED.git-id
-rwxrws---+ 1 jd2528      40 Apr 23 04:21 TEMPLATE.T2w.QC.wb.scene.REMOVED.git-id
-rwxrws---+ 1 jd2528      40 Apr 23 04:21 TEMPLATE.myelin.QC.wb.scene.REMOVED.git-id
2

Update: The QC function seems to be running without error even though the files are still missing but I will leave the Issue up because the files should be replaced before the next container build?

3

Resolution: Files added to the dev branch on Grace.