[RESOLVED] Python Error During pre-freesurfer step

Hi John again, Have you already try any of the options above? If so, does any of them work? I meet with the same question with you, and this is a complete solution:
This is the output of a SLURM job created by running

qunex_container hcp_pre_freesurfer
–sessions=“/autofs/cluster/bang/TAW_New/fMRI_processing/qunexudy_main/processing/batch_hcp.txt”
–sessionsfolder=“/autofs/cluster/bang/TAW_New/fMRI_processing/qunexudy_mainssions”
–parjobs=20
–parsessions=1
–scheduler=“SLURM,account=bandlab,partition=basic,mem-per-cpu=8000,time=05:00:00”
–overwrite=“yes”

on the SLURM login node:

qunex :cat slurm-669147.out
→ unsetting all environment variables: PATH MATLABPATH PYTHONPATH QUNEXVer TOOLS QUNEXREPO QUNEXPATH QUNEXLIBRARY QUNEXLIBRARYETC TemplateFolder FSL_FIXDIR FREESURFERDIR FREESURFER_HOME FREESURFER_SCHEDULER FreeSurferSchedulerDIR WORKBENCHDIR DCMNIIDIR DICMNIIDIR MATLABDIR MATLABBINDIR OCTAVEDIR OCTAVEPKGDIR OCTAVEBINDIR RDIR HCPWBDIR AFNIDIR PYLIBDIR FSLDIR FSLGPUDIR PALMDIR QUNEXMCOMMAND HCPPIPEDIR CARET7DIR GRADUNWARPDIR HCPPIPEDIR_Templates HCPPIPEDIR_Bin HCPPIPEDIR_Config HCPPIPEDIR_PreFS HCPPIPEDIR_FS HCPPIPEDIR_PostFS HCPPIPEDIR_fMRISurf HCPPIPEDIR_fMRIVol HCPPIPEDIR_tfMRI HCPPIPEDIR_dMRI HCPPIPEDIR_dMRITract HCPPIPEDIR_Global HCPPIPEDIR_tfMRIAnalysis MSMBin HCPPIPEDIR_dMRITractFull HCPPIPEDIR_dMRILegacy AutoPtxFolder FSLGPUScripts FSLGPUBinary EDDYCUDADIR USEOCTAVE QUNEXENV CONDADIR MSMBINDIR MSMCONFIGDIR R_LIBS FSL_FIX_CIFTIRW

A clear answer to what is an agm battery.

Hi,

It seems like in the qunex_container command you didn’t specify the --container option, which is the path to the singularity container.

The error log you provided doesn’t seem to be complete. It would be helpful if you can provide complete log output.

Lining