I need to extract (and plot) timeseries from concatenated bolds (rest1->task->rest2) for a specific ROI.
As a start, I try to extract the timeseries from rest1 only. I use the following call
qunex fc_extract_roi_timeseries_masked \
--flist='/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/analysis/lists/pb1047.list' \
--roiinfo='/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/analysis/selectedROIs/SN.names' \
--inmask=0 \
--targetf='/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/analysis/DMN_SN/' \
--options='mt' \
--method='mean' \
--ignore='udvarsme'
The error message is
Starting ...
... listing files to process
... reading file list:
- session id: pb1047
... found image file (/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/sessions/pb1047/images/functional/bold1_Atlas_s_hpss_res-mVWMWB1d.dtseries.nii)
... found GLM file (/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/sessions/pb1047/images/functional/bold1_Atlas_s_hpss_res-mVWMWB1d_coeff.dtseries.nii)
done.
... done.
Matlab Error! Processing Failed!
Index exceeds the number of array elements. Index must not exceed 1.
ERROR: fc_extract_roi_timeseries_masked failed! Please check output / log!
My list file is:
session id: pb1047
file:/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/sessions/pb1047/images/functional/bold1_Atlas_s_hpss_res-mVWMWB1d.dtseries.nii
glm:/gpfs/gibbs/pi/n3/Studies/Pushkarskaya.RA/sessions/pb1047/images/functional/bold1_Atlas_s_hpss_res-mVWMWB1d_coeff.dtseries.nii
I cannot locate the log anywhere. Please advise.