Dear Jure:
I ran into a problem with a the mapping text file. For whatever reason, the mapped files (under <>/unprocessed) do not correspond to the sequences that I specified in my mapping text.
For example, in my mapping file:
t1_mprage_sag_iso => T1w
t2_space_sag => T2w
ep2d_se_AP => SE-FM-AP
ep2d_se_PA => SE-FM-PA
ep2d_diff_mddw_99_AP => DWI:dir99_AP
ep2d_diff_mddw_99_PA => DWI:dir99_PA
ep2d_diff_mddw_98_AP => DWI:dir98_AP
ep2d_diff_mddw_98_PA => DWI:dir98_PA
But after running create_study,map_raw_data,import_dicom,create_session_info,setup_hcp
, the following sequences were mapped instead (from session_<>.txt
):
# Generated by QuNex 0.96.2 on 2023-05-09_14.38.57.240269
#
session: CLC555
subject: CLC555
dicom: /home/ehui/qunex/cimt/sessions/CLC555/dicom
raw_data: /home/ehui/qunex/cimt/sessions/CLC555/nii
data: /home/ehui/qunex/cimt/sessions/CLC555/4dfp
hcp: /home/ehui/qunex/cimt/sessions/CLC555/hcp
hcpready: true
11 : :AAHead_Scout_
21 : :AAHead_Scout__MPR_sag [1/4] i02001
22 : :AAHead_Scout__MPR_sag [2/4] i02002
23 : :AAHead_Scout__MPR_sag [3/4] i02003
24 : :AAHead_Scout__MPR_sag [4/4] i02004
31 : :AAHead_Scout__MPR_cor [1/3] i03001
32 : :AAHead_Scout__MPR_cor [2/3] i03002
33 : :AAHead_Scout__MPR_cor [3/3] i03003
41 : :AAHead_Scout__MPR_tra [1/3] i04001
42 : :AAHead_Scout__MPR_tra [2/3] i04002
43 : :AAHead_Scout__MPR_tra [3/3] i04003
51 : :t1_mprage_sag_iso
61 :T2w :t2_space_sag: se(1)
71 :T1w :vessel_scout_head: se(1)
81 : :vessel_scout_head_MSUM
91 : :vessel_scout_head_MSUM_MIP_SAG
101 : :vessel_scout_head_MSUM_MIP_COR
111 : :ep2d_se_AP
121 :SE-FM-AP :ep2d_se_PA: se(1)
131 :SE-FM-PA :ep2d_diff_mddw_99_AP: se(1)
141 :DWI:dir99_AP :ep2d_diff_mddw_99_AP_ADC: se(1)
151 : :ep2d_diff_mddw_99_AP_TRACEW
161 : :ep2d_diff_mddw_99_AP_FA
171 : :ep2d_diff_mddw_99_AP_ColFA
191 : :ep2d_diff_mddw_99_AP_TENSOR_B0
201 : :ep2d_diff_mddw_99_PA
211 : :ep2d_diff_mddw_99_PA_ADC
221 :DWI:dir99_PA :ep2d_diff_mddw_99_PA_TRACEW: se(1)
231 : :ep2d_diff_mddw_99_PA_FA
241 : :ep2d_diff_mddw_99_PA_ColFA
261 : :ep2d_diff_mddw_99_PA_TENSOR_B0
271 : :ep2d_diff_mddw_98_AP
281 : :ep2d_diff_mddw_98_AP_ADC
291 : :ep2d_diff_mddw_98_AP_TRACEW
301 :DWI:dir98_AP :ep2d_diff_mddw_98_AP_FA: se(1)
311 : :ep2d_diff_mddw_98_AP_ColFA
331 : :ep2d_diff_mddw_98_AP_TENSOR_B0
341 : :ep2d_diff_mddw_98_PA
351 : :ep2d_diff_mddw_98_PA_ADC
361 : :ep2d_diff_mddw_98_PA_TRACEW
371 : :ep2d_diff_mddw_98_PA_FA
381 :DWI:dir98_PA :ep2d_diff_mddw_98_PA_ColFA: se(1)
Please kindly advise.
Many thanks for your help as always!
Best,
Ed