I am processing a legacy MRI data set that includes resting and stimulus-evoked BOLD runs. Unfortunately the rest and stim BOLD sequences have different resolutions and different echo spacing time (and different GRE field maps, respectively). So I believe that I need to run the rest BOLD runs separately from the stim BOLD runs, so each can be assigned their respective echo spacing time. However, all BOLD runs are numbered sequentially after the “setup_hcp” step - see screenshot of the “unprocessed” folder.
Thus I believe they would all be processed together. How can I do so using the “HCP fMRIVolume pipeline” command? Thank you.