Dear Jure,
I found some potential additional bugs in the version 1.0.3.:
- Enabling motion correction in ica reapply fix gives the error:
Fri Jan 31 17:06:00 CET 2025:ReApplyFixMultiRunPipeline.sh: While running '/opt/HCP/HCPpipelines/ICAFIX/ReApplyFixMultiRunPipeline.sh --path=/project/qunex_project/sessions/ses1/hcp --subject=ses1 --fmri-names=1@2@3@4 --concat-fmri-name=fMRI_CONCAT_ALL --high-pass=0 --reg-name=NONE --low-res-mesh=32 --matlab-run-mode=0 --motionregressionTRUE --deleteintermediatesFALSE':
Fri Jan 31 17:06:00 CET 2025:ReApplyFixMultiRunPipeline.sh: ERROR: unrecognized option: '--motionregressionTRUE'
Fri Jan 31 17:06:00 CET 2025:ReApplyFixMultiRunPipeline.sh: ERROR: unrecognized option: '--motionregressionTRUE'
- map_hcp_data assumes that a motion parameters file ending with _hp0_clean (“(…)/MNINonLinear/Results/4/Movement_Regressors_hp0_clean.txt”), which I cannot create due to the issue descibed in point 1.
I would be glad to know if I am specifiying the parameters wrongly here. Still, everything works perfect in version 0.100.0.
Thank you for the effort!
Best,
Thomas